API Reference

The API reference is grouped by task so common objects and functions are not buried in a module tree. Module-level pages at the end list lower-level package entry points.

• SNP Data
  • Objects
  • Readers
  • Read Functions
  • Writers
• Ancestry
  • Objects
  • Readers
  • Read Functions
  • Writers
• Phenotypes
  • Objects
  • Covariate construction
  • Readers
• IBD
  • Objects
  • Readers
  • Read Functions
• Processing
  • PCA
  • TorchPCA
  • mdPCA
  • maasMDS
  • Embedding Utilities
• Statistics
  • allele_freq_stream()
  • f2()
  • f3()
  • f4()
  • d_stat()
  • f4_ratio()
  • fst()
  • export_qp()
• Association and Utilities
  • GWAS and admixture mapping
  • Sample labels
• Simulation
  • OnlineSimulator
• Datasets
  • Example Datasets
  • Synthetic Data Builders
• Visualization
  • scatter()
  • plot_lai()
  • reorder_admixture()
  • plot_admixture()
  • manhattan_plot()
  • qq_plot()
  • pong_viz()
  • create_filemap()
  • chromosome_painting()
• Command-Line Interface
  • Subcommands
  • Examples
  • CLI entry point
• Module Index

For the complete symbol index, see the Index or the Module Index page.