TutorialsΒΆ
End-to-end notebooks for data objects, population structure, ancestry visualization, association testing, and GRG workflows. Examples use synthetic or bundled datasets unless a notebook states otherwise.
SNPObject
Read, inspect, filter, and manipulate SNP data.
PCA
Run PCA workflows on SNP data and inspect components.
Allele Frequency
Compute cohort and ancestry-aware allele frequencies.
F-statistics
Compute f-statistics, D-statistics, f4-ratios, and F_ST.
Local Ancestry Visualization
Render local ancestry outputs at sample and dataset levels.
mdPCA
Recover population structure under high genotype missingness.
maasMDS
Calibrate distances across multiple genotyping arrays.
Admixture Mapping
Run the admixture-mapping pipeline and inspect its outputs.
Phenotype Objects
Load and work with phenotype containers.
GRG
Work with genotype representation graph data.